STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0391PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nmu:Nmul_A0735 short-chain dehydrogenase/reductase SDR. (233 aa)    
Predicted Functional Partners:
Slit_0389
PFAM: protein of unknown function DUF82; KEGG: pzu:PHZ_c2983 hypothetical protein.
       0.645
Slit_0390
KEGG: noc:Noc_0305 hypothetical protein.
       0.645
Slit_0388
TIGRFAM: para-aminobenzoate synthase, subunit I; KEGG: mfa:Mfla_1648 aminodeoxychorismate synthase, subunit I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein.
       0.531
Slit_0168
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nmu:Nmul_A0336 pteridine reductase.
  
 
 
 0.512
Slit_2680
KEGG: mmb:Mmol_0279 hypothetical protein.
  
     0.474
Slit_1856
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; Enoyl-CoA hydratase/isomerase; KEGG: nmu:Nmul_A0097 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
   
  
 0.427
Slit_0387
PFAM: 20S proteasome A and B subunits; KEGG: lhk:LHK_02183 ATP-dependent protease peptidase subunit.
       0.400
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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