Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Slit_0412KEGG: tcx:Tcr_1964 cytochrome c oxidase, cbb3-type, subunit II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO. (265 aa)    
Predicted Functional Partners:
Slit_0411
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; KEGG: rma:Rmag_0039 cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 0.999
Slit_0414
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 0.999
Slit_2655
KEGG: sth:STH3153 cytochrome c oxidase heme b and copper-binding subunit; PFAM: cytochrome c oxidase subunit I.
 0.999
Slit_2659
PFAM: cytochrome c oxidase subunit I; KEGG: ilo:IL1297 Cbb3-type cytochrome oxidase, subunit 1.
 
 
 0.940
Slit_0416
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: vok:COSY_0081 ferredoxin.
 
  
 0.931
Slit_2654
PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: eba:ebA2882 cytochrome oxidase, cytochrome c subunit.
  
  
 
0.928
Slit_0130
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 0.921
Slit_1124
KEGG: mmb:Mmol_1053 hypothetical protein.
     
  0.900
Slit_1874
Polyferredoxin-like protein; KEGG: gem:GM21_3044 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 0.892
Slit_2686
Polyferredoxin-like protein; KEGG: sus:Acid_3512 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
  
 0.891
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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