Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0420KEGG: dar:Daro_2990 hypothetical protein. (224 aa)    
Predicted Functional Partners:
Slit_0417
PFAM: FixH family protein; KEGG: tgr:Tgr7_2995 hypothetical protein.
  
     0.765
Slit_0421
KEGG: tcx:Tcr_0164 hypothetical protein.
       0.753
Slit_0419
KEGG: tcx:Tcr_1959 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type.
  
     0.678
Slit_2707
KEGG: hna:Hneap_1461 putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.
  
     0.654
Slit_2020
SMART: Rhodanese domain protein; KEGG: hna:Hneap_1028 rhodanese domain protein.
  
     0.557
Slit_0422
Transcriptional regulator, Crp/Fnr family; Manually curated; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: app:CAP2UW1_2134 transcriptional regulator, Crp/Fnr family; SMART: cyclic nucleotide-binding; regulatory protein Crp.
       0.512
Slit_2178
PFAM: protein of unknown function DUF336; KEGG: tgr:Tgr7_2753 hypothetical protein.
  
     0.510
Slit_1220
KEGG: hna:Hneap_1461 putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.
  
     0.495
Slit_2477
PFAM: porin Gram-negative type; KEGG: eba:ebA2143 putative porin precursor transmembrane protein.
  
     0.482
Slit_1709
PFAM: DMSO reductase anchor subunit (DmsC); KEGG: tgr:Tgr7_0338 hypothetical protein.
  
     0.473
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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