STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0465Putative transcriptional regulator, Crp/Fnr family; KEGG: pmy:Pmen_1780 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding. (157 aa)    
Predicted Functional Partners:
Slit_1220
KEGG: hna:Hneap_1461 putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.
  
  
 
0.926
Slit_1242
Putative transcriptional regulator, Crp/Fnr family; KEGG: amr:AM1_2994 cyclic nucleotide-binding protein, putative; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.
  
  
 
0.922
Slit_2707
KEGG: hna:Hneap_1461 putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.
  
  
  0.918
Slit_1432
Putative transcriptional regulator, Crp/Fnr family; KEGG: dal:Dalk_2479 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.
  
  
  0.915
Slit_1290
KEGG: tgr:Tgr7_0081 two component transcriptional regulator, AraC family; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region.
    
  0.902
Slit_2198
KEGG: app:CAP2UW1_3892 adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; Ankyrin; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; Ankyrin.
  
 
  0.807
Slit_0464
PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: hch:HCH_04884 multidrug ABC transporter.
 
     0.785
Slit_0463
RNA-binding S4 domain protein; KEGG: bav:BAV1651 ribosomal large subunit pseudouridine synthase F (pseudouridylate synthase); PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family.
       0.757
Slit_2800
Putative transcriptional regulator, Crp/Fnr family; KEGG: hypothetical protein; K04739 cAMP-dependent protein kinase regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.
  
     0.757
Slit_1739
Adenylate/guanylate cyclase with Chase sensor; KEGG: hha:Hhal_1889 putative adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase.
 
 
 0.750
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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