STRINGSTRING
Slit_0477 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0477" - Signal transduction protein in Sideroxydans lithotrophicus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0477Signal transduction protein (290 aa)    
Predicted Functional Partners:
Slit_0728
Signal transduction protein (287 aa)
   
          0.778
Slit_1202
Response regulator receiver protein (559 aa)
   
          0.661
Slit_0478
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (751 aa)
     
      0.606
Slit_1589
Anti-sigma-factor antagonist (108 aa)
   
          0.468
Slit_0563
Anti-sigma-28 factor, FlgM (105 aa)
   
          0.467
Slit_2087
PilC (1618 aa)
   
          0.463
Slit_1863
Outer membrane efflux protein (436 aa)
   
          0.462
rbfA
Ribosome-binding factor A; Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5’-terminal helix region of 16S rRNA (118 aa)
              0.414
Slit_1302
Histidine kinase (511 aa)
   
 
      0.403
cheD
CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis (187 aa)
 
          0.400
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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