STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0489KEGG: aav:Aave_0918 type II secretion system protein N. (246 aa)    
Predicted Functional Partners:
Slit_0490
PFAM: General secretion pathway M protein; KEGG: reu:Reut_A3227 general secretion pathway M protein.
     
 0.818
Slit_0492
PFAM: General secretion pathway protein K; KEGG: nmu:Nmul_A1894 general secretion pathway protein K.
     
 0.818
Slit_0491
PFAM: General secretion pathway L; KEGG: nmu:Nmul_A1893 general secretion pathway L.
     
 0.807
Slit_0494
KEGG: nmu:Nmul_A1896 general secretion pathway protein I; TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J.
     
 0.805
Slit_0495
KEGG: bmj:BMULJ_00012 general secretion pathway protein H.
     
 0.805
Slit_0493
TIGRFAM: general secretion pathway protein J; KEGG: nmu:Nmul_A1895 general secretion pathway protein J.
     
 0.799
Slit_0506
PFAM: NHL repeat containing protein; KEGG: geo:Geob_3253 NHL repeat containing protein.
      
 0.540
Slit_0496
KEGG: rpf:Rpic12D_3044 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G.
     
 0.500
Slit_0487
KEGG: rpf:Rpic12D_3510 hypothetical protein.
       0.445
Slit_0488
KEGG: rpf:Rpic12D_3511 hypothetical protein.
       0.445
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.