STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0491PFAM: General secretion pathway L; KEGG: nmu:Nmul_A1893 general secretion pathway L. (402 aa)    
Predicted Functional Partners:
Slit_0494
KEGG: nmu:Nmul_A1896 general secretion pathway protein I; TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J.
 
  
 0.958
Slit_0493
TIGRFAM: general secretion pathway protein J; KEGG: nmu:Nmul_A1895 general secretion pathway protein J.
 
   
 0.957
Slit_0492
PFAM: General secretion pathway protein K; KEGG: nmu:Nmul_A1894 general secretion pathway protein K.
 
  
 0.952
Slit_0490
PFAM: General secretion pathway M protein; KEGG: reu:Reut_A3227 general secretion pathway M protein.
  
 
 0.905
Slit_0495
KEGG: bmj:BMULJ_00012 general secretion pathway protein H.
  
  
 0.850
Slit_0489
KEGG: aav:Aave_0918 type II secretion system protein N.
     
 0.807
Slit_0499
KEGG: nmu:Nmul_A1902 type II and III secretion system protein; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein.
 
  
 0.803
Slit_0496
KEGG: rpf:Rpic12D_3044 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G.
 
  
 0.762
Slit_0498
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.725
nudJ
PFAM: NUDIX hydrolase; KEGG: dar:Daro_3293 NUDIX hydrolase; Belongs to the Nudix hydrolase family. NudJ subfamily.
 
     0.616
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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