STRINGSTRING
Slit_0496 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0496" - General secretion pathway protein G in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0496General secretion pathway protein G (146 aa)    
Predicted Functional Partners:
Slit_0493
General secretion pathway protein J (201 aa)
 
  0.993
Slit_0497
General secretion pathway protein F (407 aa)
 
  0.979
Slit_0499
General secretion pathway protein D (690 aa)
 
 
  0.971
Slit_0498
General secretory pathway protein E (496 aa)
 
  0.970
Slit_0492
General secretion pathway protein K (305 aa)
 
 
  0.960
Slit_0494
General secretion pathway protein I (124 aa)
 
     
  0.891
Slit_1830
Type II secretion system protein E (561 aa)
 
  0.884
Slit_1823
Type II secretion system protein G (128 aa)
 
   
 
0.884
Slit_2608
Type II secretion system protein E (567 aa)
   
  0.867
Slit_2073
Type II secretion system protein E (592 aa)
   
  0.867
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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