STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0499KEGG: nmu:Nmul_A1902 type II and III secretion system protein; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein. (690 aa)    
Predicted Functional Partners:
Slit_0498
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 0.942
Slit_0500
Hypothetical protein; KEGG: pzu:PHZ_c0653 type II secretion system protein C.
  
 
 0.931
Slit_1825
PFAM: type II and III secretion system protein; NolW domain protein; cellulosome anchoring protein cohesin region; Secretin/TonB short domain; KEGG: rso:RS02977 putative GspD-related protein.
 
  
0.918
Slit_0493
TIGRFAM: general secretion pathway protein J; KEGG: nmu:Nmul_A1895 general secretion pathway protein J.
 
  
 0.909
Slit_0496
KEGG: rpf:Rpic12D_3044 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G.
  
 0.896
Slit_0494
KEGG: nmu:Nmul_A1896 general secretion pathway protein I; TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J.
 
  
 0.890
Slit_0492
PFAM: General secretion pathway protein K; KEGG: nmu:Nmul_A1894 general secretion pathway protein K.
 
   
 0.886
Slit_0497
KEGG: cvi:CV_3812 general secretion pathway protein F; TIGRFAM: general secretion pathway protein F; PFAM: Type II secretion system F domain.
 
  
 0.851
Slit_1832
KEGG: nmu:Nmul_A2590 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G.
  
 0.838
Slit_0491
PFAM: General secretion pathway L; KEGG: nmu:Nmul_A1893 general secretion pathway L.
 
  
 0.803
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.