Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Slit_0501PFAM: ABC-3 protein; KEGG: app:CAP2UW1_4082 ABC-3 protein. (248 aa)    
Predicted Functional Partners:
Slit_0502
PFAM: periplasmic solute binding protein; KEGG: app:CAP2UW1_4081 periplasmic solute binding protein.
 
  
 0.995
Slit_0503
KEGG: dar:Daro_0198 hypothetical protein.
 
     0.934
fur
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: mei:Msip34_1882 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
  
 0.583
Slit_0498
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
       0.558
Slit_0499
KEGG: nmu:Nmul_A1902 type II and III secretion system protein; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein.
       0.558
Slit_0500
Hypothetical protein; KEGG: pzu:PHZ_c0653 type II secretion system protein C.
       0.558
Slit_2644
Spermidine synthase-like protein; KEGG: bbt:BBta_1296 putative spermine/spermidine synthase family protein.
  
     0.509
Slit_0504
Hypothetical protein.
       0.468
Slit_0437
KEGG: app:CAP2UW1_4310 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
     
 0.444
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
     
 0.434
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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