STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0503KEGG: dar:Daro_0198 hypothetical protein. (403 aa)    
Predicted Functional Partners:
Slit_0502
PFAM: periplasmic solute binding protein; KEGG: app:CAP2UW1_4081 periplasmic solute binding protein.
 
     0.939
Slit_0501
PFAM: ABC-3 protein; KEGG: app:CAP2UW1_4082 ABC-3 protein.
 
     0.938
Slit_2591
PFAM: TPR repeat-containing protein; KEGG: har:HEAR1937 putative MSHA biogenesis protein MshN.
  
     0.541
Slit_0504
Hypothetical protein.
       0.513
Slit_0498
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
       0.507
Slit_0499
KEGG: nmu:Nmul_A1902 type II and III secretion system protein; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein.
       0.507
Slit_0500
Hypothetical protein; KEGG: pzu:PHZ_c0653 type II secretion system protein C.
       0.507
Slit_0505
KEGG: vei:Veis_4466 FAD dependent oxidoreductase.
       0.463
Slit_2597
KEGG: har:HEAR1943 putative mannose-sensitive agglutinin (MSHA) biogenesis protein MshI.
  
     0.423
Slit_1119
KEGG: tbd:Tbd_2174 hypothetical protein.
  
     0.418
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.