STRINGSTRING
Slit_0506 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0506" - NHL repeat-containing protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0506NHL repeat-containing protein (385 aa)    
Predicted Functional Partners:
Slit_2768
Cytochrome C biogenesis protein transmembrane region (565 aa)
     
  0.777
Slit_1451
Hypothetical protein (531 aa)
 
          0.644
Slit_2308
Hypothetical protein (461 aa)
   
          0.571
Slit_0253
Fibronectin type III domain protein (1251 aa)
   
          0.525
Slit_0252
Adenylate/guanylate cyclase with Chase sensor (680 aa)
 
          0.504
Slit_1984
NADP oxidoreductase coenzyme F420-dependent (212 aa)
   
          0.428
Slit_2494
Transmembrane region and signal peptide prediction (127 aa)
   
          0.409
Slit_1165
Ankyrin (232 aa)
   
          0.407
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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