Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0506PFAM: NHL repeat containing protein; KEGG: geo:Geob_3253 NHL repeat containing protein. (385 aa)    
Predicted Functional Partners:
Slit_2768
PFAM: cytochrome c biogenesis protein transmembrane region; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: oca:OCAR_6268 cytochrome c biogenesis protein, transmembrane region.
     0.769
Slit_1451
KEGG: geo:Geob_1618 NHL repeat containing protein; PFAM: Ig domain protein group 2 domain protein; Kelch repeat-containing protein; SMART: Ig domain protein group 2 domain protein; Kelch repeat-containing protein.
 
  
 0.578
Slit_0489
KEGG: aav:Aave_0918 type II secretion system protein N.
      
 0.540
Slit_2580
KEGG: nmu:Nmul_A0176 cell division FtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: DNA translocase ftsK gamma; AAA ATPase.
    
 
 0.499
Slit_1752
PFAM: protein of unknown function DUF255; KEGG: tbd:Tbd_2727 hypothetical protein.
    
   0.429
Slit_2308
Manually curated; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: gur:Gura_1321 TPR repeat-containing protein; SMART: Tetratricopeptide repeat.
  
     0.415
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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