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Slit_0507 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0507" - TonB family protein in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0507TonB family protein (290 aa)    
Predicted Functional Partners:
Slit_1366
MotA/TolQ/ExbB proton channel (201 aa)
 
 
  0.955
Slit_1365
Biopolymer transport protein ExbD/TolR (140 aa)
 
 
  0.921
Slit_0508
Ribonuclease II (616 aa)
   
        0.913
Slit_1390
Biopolymer transport protein ExbD/TolR (136 aa)
   
 
  0.803
Slit_0518
Protein TolR (139 aa)
   
 
  0.803
Slit_1389
MotA/TolQ/ExbB proton channel (218 aa)
   
 
  0.792
Slit_2681
TonB-dependent receptor plug (670 aa)
   
 
  0.790
Slit_1384
TonB-dependent receptor (711 aa)
   
 
  0.790
Slit_0731
TonB-dependent copper receptor (679 aa)
   
 
  0.790
Slit_0517
Protein TolQ (225 aa)
   
 
  0.789
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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