STRINGSTRING
Slit_0509 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0509" - Signal transduction protein with EFhand domain in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0509Signal transduction protein with EFhand domain (162 aa)    
Predicted Functional Partners:
Slit_0387
20S proteasome A and B subunits (188 aa)
   
          0.683
Slit_2875
O-antigen polymerase (425 aa)
   
          0.679
Slit_0490
General secretion pathway M protein (167 aa)
   
          0.662
Slit_2164
Type 4 fimbrial biogenesis PilW-related protein transmembrane (338 aa)
   
          0.651
Slit_2165
Type IV pilus modification protein PilV (213 aa)
   
          0.605
Slit_2162
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein (1441 aa)
   
          0.536
Slit_0975
Hypothetical protein (124 aa)
   
          0.510
Slit_1816
Multicopper oxidase type 3 (2873 aa)
   
          0.485
Slit_0579
Hypothetical protein (414 aa)
   
          0.452
Slit_2267
Hypothetical protein (63 aa)
   
          0.444
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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