STRINGSTRING
Slit_0529 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0529" - UspA domain protein in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0529UspA domain protein (141 aa)    
Predicted Functional Partners:
Slit_0528
Integral membrane protein TerC (245 aa)
 
          0.946
Slit_0527
succinyl-CoA synthetase, subunit alpha (293 aa)
              0.824
sucC
succinyl-CoA synthetase, subunit beta (389 aa)
              0.824
Slit_2153
UspA domain protein (147 aa)
   
          0.706
groL
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions (548 aa)
     
 
  0.638
Slit_0530
Serine/threonine protein kinase (843 aa)
   
        0.635
Slit_0531
Protein serine/threonine phosphatase (274 aa)
   
      0.586
Slit_0442
Sodium/hydrogen exchanger (666 aa)
         
  0.510
Slit_2864
ATPase P (902 aa)
   
   
  0.458
Slit_1340
ATPase P (834 aa)
   
   
  0.458
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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