STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0538KEGG: har:HEAR2619 fimbrial protein precursor (pilin) (strain P1); Belongs to the N-Me-Phe pilin family. (179 aa)    
Predicted Functional Partners:
Slit_2699
PFAM: Type II secretion system F domain; KEGG: mei:Msip34_0586 type II secretion system protein.
 
   
 0.619
Slit_2759
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dar:Daro_3883 pilus retraction protein PilT; SMART: AAA ATPase.
 
   
 0.586
Slit_0539
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: tbd:Tbd_2199 TPR repeat-containing protein.
     
 0.575
Slit_0112
Type IV pilus secretin PilQ; KEGG: azo:azo3646 type 4 fimbrial biogenesis protein; TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain.
 
   
 0.563
Slit_0108
TIGRFAM: type IV pilus assembly protein PilM; KEGG: dar:Daro_0210 type IV pilus assembly protein PilM.
 
   
 0.551
Slit_2164
KEGG: rpi:Rpic_2913 putative type 4 fimbrial biogenesis PilW-related protein transmembrane.
  
  
 0.549
Slit_2083
KEGG: mms:mma_3359 type IV pilus assembly related protein.
  
  
 0.547
Slit_2084
TIGRFAM: type IV pilus modification protein PilV; KEGG: mei:Msip34_2596 hypothetical protein.
  
  
 0.546
Slit_2162
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein; KEGG: rpi:Rpic_2911 putative type 4 fimbrial biogenesis PilY1-related protein signal peptide.
 
  
 0.538
Slit_2760
KEGG: mfa:Mfla_2106 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E.
  
   
 0.536
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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