STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_0550Chemotaxis phosphatase, CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). (246 aa)    
Predicted Functional Partners:
Slit_0549
KEGG: dze:Dd1591_1545 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.
 
 0.999
Slit_0547
KEGG: app:CAP2UW1_3839 response regulator receiver modulated CheW protein; PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver.
 
 
 0.983
Slit_0551
CheA signal transduction histidine kinase; KEGG: azo:azo1462 chemotaxis protein CheA; PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; SMART: ATP-binding region ATPase domain protein; CheW domain protein; Hpt domain protein.
  
 
 0.978
Slit_1588
KEGG: mei:Msip34_2712 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; SMART: Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein.
  
 
 0.953
Slit_0543
PFAM: OmpA/MotB domain protein; KEGG: mms:mma_2098 flagellar motor protein MotB.
 
  
 0.950
Slit_0548
KEGG: azo:azo1459 chemotaxis protein CheV-like; PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver.
 
  
 0.934
Slit_2936
KEGG: app:CAP2UW1_3590 CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; SMART: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein.
  
 
 0.931
Slit_1590
KEGG: two-component system sensor histidine kinase/response regulator, putative; PFAM: response regulator receiver; SMART: response regulator receiver.
 
 
 0.923
fliA
RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
 
  
 0.893
Slit_0573
TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ-like; KEGG: tbd:Tbd_1629 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2.
 
  
 0.882
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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