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Slit_0563 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0563" - Anti-sigma-28 factor, FlgM in Sideroxydans lithotrophicus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0563Anti-sigma-28 factor, FlgM (105 aa)    
Predicted Functional Partners:
Slit_0562
FlgN family protein (157 aa)
 
          0.940
Slit_2611
Hypothetical protein (144 aa)
   
          0.749
Slit_0564
Flagella basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly (238 aa)
 
          0.715
Slit_2924
Hypothetical protein (158 aa)
   
          0.710
Slit_0619
Flagellar protein FlaG protein (123 aa)
   
          0.698
Slit_1281
Transmembrane protein (121 aa)
   
          0.694
Slit_1275
Anti sigma-E protein, RseA (159 aa)
   
          0.676
Slit_0940
Hypothetical protein (352 aa)
   
          0.634
Slit_0455
Sporulation domain protein (263 aa)
   
          0.634
Slit_2454
Hypothetical protein (251 aa)
   
          0.631
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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