Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_0578KEGG: ttr:Tter_2251 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. (271 aa)    
Predicted Functional Partners:
Slit_0577
PFAM: ABC-2 type transporter; KEGG: cpc:Cpar_1860 ABC-2 type transporter.
 
  
 0.963
Slit_2515
PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter.
  
 0.959
Slit_2514
PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2392 fis family transcriptional regulator.
  
 0.958
Slit_2575
KEGG: mxa:MXAN_6402 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.920
Slit_2690
PFAM: inner-membrane translocator; KEGG: app:CAP2UW1_3610 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
      0.769
Slit_2816
KEGG: tbd:Tbd_0276 ABC-2 type transporter, NodJ; TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter.
 
  
 0.634
Slit_0721
PFAM: ABC-2 type transporter; KEGG: cps:CPS_1067 putative ABC transporter, permease protein.
 
  
 0.589
Slit_2360
KEGG: nmu:Nmul_A0584 putative ABC-2 type transport system permease protein.
  
 
 0.589
Slit_1489
KEGG: sdl:Sdel_1725 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.574
Slit_0579
PFAM: Protein of unknown function DUF2252; KEGG: bxe:Bxe_B2085 hypothetical protein.
       0.561
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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