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Slit_0578 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0578" - ABC transporter in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0578ABC transporter (271 aa)    
Predicted Functional Partners:
Slit_0577
ABC transporter (256 aa)
 
  0.992
Slit_2514
ABC transporter (379 aa)
  0.929
Slit_2515
ABC transporter (369 aa)
  0.920
Slit_2816
ABC transporter (261 aa)
 
  0.874
Slit_0721
ABC transporter (335 aa)
 
  0.859
msbA
Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (583 aa)
 
0.730
Slit_2575
ABC transporter (235 aa)
   
0.690
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner (227 aa)
 
   
0.668
Slit_1797
Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes (227 aa)
       
    0.668
Slit_1489
ABC transporter (242 aa)
   
0.665
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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