STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0601KEGG: bph:Bphy_2997 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat. (698 aa)    
Predicted Functional Partners:
Slit_0611
KEGG: bph:Bphy_2998 TPR domain-containing protein.
 
    0.907
Slit_0602
Methyltransferase type 12; KEGG: dat:HRM2_00990 two domain fusion protein (N:methyltransferase, C:TPR-repeat family protein); PFAM: Methyltransferase type 12; TPR repeat-containing protein; Methyltransferase type 11; SMART: Tetratricopeptide repeat; MCP methyltransferase CheR-type.
 
   
0.708
Slit_0610
KEGG: ajs:Ajs_0556 glycosyl transferase family protein; manually curated; PFAM: glycosyl transferase family 2.
   
   0.662
Slit_0603
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: rme:Rmet_5236 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
       0.605
Slit_0604
PFAM: WbqC-like family protein; KEGG: dfe:Dfer_2775 WbqC-like family protein.
       0.605
Slit_1793
KEGG: nmu:Nmul_A1209 cytochrome c-type biogenesis protein CcmF; TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein.
  
 
 0.602
Slit_0605
PFAM: Methyltransferase type 12; KEGG: bte:BTH_I3213 hypothetical protein.
       0.601
Slit_0606
KEGG: bte:BTH_I3214 transferase, putative.
       0.601
Slit_0607
TIGRFAM: methyltransferase FkbM family; KEGG: lbl:LBL_1195 hypothetical protein.
       0.593
Slit_0608
KEGG: bte:BTH_I3215 hypothetical protein.
       0.586
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.