Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Slit_0606KEGG: bte:BTH_I3214 transferase, putative. (219 aa)    
Predicted Functional Partners:
Slit_0604
PFAM: WbqC-like family protein; KEGG: dfe:Dfer_2775 WbqC-like family protein.
 
    0.949
Slit_0608
KEGG: bte:BTH_I3215 hypothetical protein.
 
     0.949
Slit_0609
PFAM: Phytanoyl-CoA dioxygenase; KEGG: ppw:PputW619_3748 hypothetical protein.
 
     0.931
Slit_0605
PFAM: Methyltransferase type 12; KEGG: bte:BTH_I3213 hypothetical protein.
 
     0.842
Slit_0603
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: rme:Rmet_5236 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.841
lpxB
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
  
 0.776
Slit_0602
Methyltransferase type 12; KEGG: dat:HRM2_00990 two domain fusion protein (N:methyltransferase, C:TPR-repeat family protein); PFAM: Methyltransferase type 12; TPR repeat-containing protein; Methyltransferase type 11; SMART: Tetratricopeptide repeat; MCP methyltransferase CheR-type.
       0.768
Slit_0610
KEGG: ajs:Ajs_0556 glycosyl transferase family protein; manually curated; PFAM: glycosyl transferase family 2.
     
 0.764
Slit_0607
TIGRFAM: methyltransferase FkbM family; KEGG: lbl:LBL_1195 hypothetical protein.
       0.762
Slit_1814
KEGG: rso:RSc2295 putative signal peptide protein.
  
     0.648
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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