Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_0615KEGG: neu:NE2077 hypothetical protein. (357 aa)    
Predicted Functional Partners:
Slit_0573
TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ-like; KEGG: tbd:Tbd_1629 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2.
  
  
 0.967
ycgR
YcgR family protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
 
    0.939
Slit_0617
KEGG: mms:mma_1447 FliS flagellar protein; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS.
  
  
 0.927
Slit_0594
KEGG: dar:Daro_0769 flagellar biosynthesis chaperone FliJ-like protein; TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein.
 
  
 0.922
Slit_0614
PFAM: type III secretion exporter; KEGG: app:CAP2UW1_0921 putative flagellar biosynthetic protein.
 
  
 0.912
Slit_0618
Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.872
Slit_0619
PFAM: flagellar protein FlaG protein; KEGG: tbd:Tbd_1591 putative flagellar protein FlaG.
 
    0.870
Slit_0589
KEGG: har:HEAR1886 putative FliO (partial); TIGRFAM: flagellar biosynthetic protein FliO; PFAM: flagellar biosynthesis protein FliO.
 
  
 0.869
Slit_0596
PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: tbd:Tbd_1602 flagellar assembly protein FliH.
 
  
 0.833
Slit_0592
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.801
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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