STRINGSTRING
Slit_0643 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0643" - Polysulfide reductase NrfD in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0643Polysulfide reductase NrfD (455 aa)    
Predicted Functional Partners:
Slit_0645
Hypothetical protein (178 aa)
 
          0.972
Slit_0642
4Fe-4S ferredoxin, iron-sulfur binding protein (291 aa)
 
   
  0.971
Slit_0641
Molybdopterin dinucleotide-binding region (744 aa)
 
   
  0.969
Slit_0640
Hypothetical protein (201 aa)
 
          0.942
Slit_0646
Hypothetical protein (338 aa)
 
       
0.902
Slit_0644
Hypothetical protein (176 aa)
              0.883
Slit_0647
Glutathione S-transferase domain protein (199 aa)
              0.798
Slit_1676
4Fe-4S ferredoxin iron-sulfur binding domain protein (238 aa)
 
   
  0.791
Slit_0648
Stringent starvation protein B (134 aa)
              0.766
Slit_1710
4Fe-4S ferredoxin iron-sulfur binding domain protein (243 aa)
 
   
  0.611
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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