STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0644KEGG: tro:trd_0465 hypothetical protein. (176 aa)    
Predicted Functional Partners:
Slit_0643
PFAM: Polysulphide reductase NrfD; KEGG: gme:Gmet_1812 polysulphide reductase, NrfD.
   
   0.860
Slit_0646
Hypothetical protein; KEGG: dat:HRM2_15130 MopC.
   
   0.827
Slit_0640
KEGG: gme:Gmet_1809 hypothetical protein.
   
 
 0.807
Slit_1608
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; NADH dehydrogenase (ubiquinone) 24 kDa subunit; Soluble ligand binding domain; KEGG: dar:Daro_0979 NADH dehydrogenase.
   
 
 0.799
Slit_0642
KEGG: gme:Gmet_1811 4Fe-4S ferredoxin, iron-sulfur binding protein.
   
   0.798
Slit_0641
Molybdopterin dinucleotide-binding region; KEGG: gur:Gura_2777 nitrate reductase; manually curated; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.793
Slit_0645
KEGG: gme:Gmet_1814 hypothetical protein.
       0.793
Slit_0130
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.758
Slit_1123
PFAM: cytochrome c oxidase subunit III; KEGG: tbd:Tbd_0560 putative additional subunit of nitric oxide reductase (Nor) complex, membrane protein.
  
 
 0.738
Slit_0647
PFAM: Glutathione S-transferase domain; KEGG: nmu:Nmul_A1002 glutathione S-transferase-like protein; Belongs to the GST superfamily.
       0.717
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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