STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0646Hypothetical protein; KEGG: dat:HRM2_15130 MopC. (338 aa)    
Predicted Functional Partners:
Slit_0640
KEGG: gme:Gmet_1809 hypothetical protein.
 
 
 
 0.973
Slit_0642
KEGG: gme:Gmet_1811 4Fe-4S ferredoxin, iron-sulfur binding protein.
 
 
 0.971
Slit_0641
Molybdopterin dinucleotide-binding region; KEGG: gur:Gura_2777 nitrate reductase; manually curated; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.970
Slit_0645
KEGG: gme:Gmet_1814 hypothetical protein.
 
 
   0.959
Slit_0644
KEGG: tro:trd_0465 hypothetical protein.
   
   0.827
Slit_0643
PFAM: Polysulphide reductase NrfD; KEGG: gme:Gmet_1812 polysulphide reductase, NrfD.
 
    
0.814
Slit_1676
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tbd:Tbd_2475 iron-sulfur cluster protein.
 
 
 0.802
Slit_0647
PFAM: Glutathione S-transferase domain; KEGG: nmu:Nmul_A1002 glutathione S-transferase-like protein; Belongs to the GST superfamily.
       0.768
Slit_0648
PFAM: Stringent starvation protein B; KEGG: tbd:Tbd_1829 ClpXP protease specificity-enhancing factor.
       0.736
Slit_1710
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tgr:Tgr7_0339 putative iron-sulfur cluster-binding protein.
 
 
 0.720
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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