STRINGSTRING
Slit_0671 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0671" - ErfK/YbiS/YcfS/YnhG family protein in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0671ErfK/YbiS/YcfS/YnhG family protein (388 aa)    
Predicted Functional Partners:
Slit_0672
Hypothetical protein (345 aa)
 
          0.972
cysS
cysteinyl-tRNA synthetase (491 aa)
              0.707
Slit_0670
Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (164 aa)
              0.706
lpxH
UDP-2,3-diacylglucosamine hydrolase; Catalyzes the hydrolysis of the pyrophosphate bond of UDP-2,3-diacylglucosamine to yield 2,3-diacylglucosamine 1- phosphate (lipid X) and UMP (241 aa)
              0.690
Slit_0616
Flagellar export chaperone (106 aa)
   
          0.639
Slit_2043
Hypothetical protein (313 aa)
   
          0.628
Slit_2211
Hypothetical protein (456 aa)
   
          0.626
Slit_2681
TonB-dependent receptor plug (670 aa)
   
          0.621
Slit_0674
Transmembrane protein (116 aa)
              0.608
glnS
glutaminyl-tRNA synthetase (559 aa)
              0.608
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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