STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0688KEGG: app:CAP2UW1_0623 sporulation domain protein; PFAM: Sporulation domain protein; SMART: AAA ATPase. (517 aa)    
Predicted Functional Partners:
Slit_0689
Two component, sigma54 specific, transcriptional regulator, Fis family; Manually curated; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: mfa:Mfla_0074 two component, sigma54 specific, fis family transcriptional regulator; SMART: response regulator receiver; AAA ATPase.
 
     0.813
Slit_0687
KEGG: dar:Daro_3405 type II and III secretion system protein; TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.793
Slit_2593
PFAM: type II and III secretion system protein; Secretin/TonB short domain; KEGG: har:HEAR1939 mannose-sensitive hemagglutinin L.
 
  
 0.738
Slit_0686
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; KEGG: app:CAP2UW1_0625 tetratricopeptide TPR_2 repeat protein.
 
   
 0.681
Slit_0679
KEGG: app:CAP2UW1_0632 hypothetical protein.
 
     0.676
Slit_0683
KEGG: mfa:Mfla_0080 hypothetical protein.
       0.651
Slit_0693
PFAM: toluene tolerance family protein; KEGG: net:Neut_0854 toluene tolerance family protein.
 
     0.641
Slit_0682
KEGG: mei:Msip34_0084 hypothetical protein.
       0.628
Slit_0681
KEGG: dar:Daro_3411 hypothetical protein.
       0.620
Slit_0680
KEGG: mmb:Mmol_0249 hypothetical protein.
       0.616
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.