STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0690KEGG: tbd:Tbd_1900 ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase. (266 aa)    
Predicted Functional Partners:
Slit_0691
PFAM: protein of unknown function DUF140; KEGG: tbd:Tbd_1899 hypothetical protein.
 0.998
Slit_0692
PFAM: Mammalian cell entry related domain protein; KEGG: nmu:Nmul_A2747 hypothetical protein.
 
 0.998
Slit_1738
PFAM: protein of unknown function DUF140; KEGG: geo:Geob_2687 protein of unknown function DUF140.
 
 0.992
Slit_0694
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: nmu:Nmul_A2745 anti-sigma-factor antagonist domain-containing protein.
  
 0.975
Slit_0693
PFAM: toluene tolerance family protein; KEGG: net:Neut_0854 toluene tolerance family protein.
 
 
 0.963
Slit_1741
PFAM: Mammalian cell entry related domain protein; KEGG: gur:Gura_1894 hypothetical protein.
 
 0.938
Slit_1601
KEGG: rfr:Rfer_2722 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.909
msbA
Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
    
0.907
Slit_1226
KEGG: tbd:Tbd_1190 ATP-binding ABC transporter protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 
0.902
Slit_1742
Hypothetical protein; KEGG: gur:Gura_1895 ABC-type transport system involved in resistance to organic solvents ATPase component-like protein.
     
  0.900
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.