Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0691PFAM: protein of unknown function DUF140; KEGG: tbd:Tbd_1899 hypothetical protein. (262 aa)    
Predicted Functional Partners:
Slit_0692
PFAM: Mammalian cell entry related domain protein; KEGG: nmu:Nmul_A2747 hypothetical protein.
 0.999
Slit_0690
KEGG: tbd:Tbd_1900 ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
 0.998
Slit_1226
KEGG: tbd:Tbd_1190 ATP-binding ABC transporter protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 0.994
Slit_0693
PFAM: toluene tolerance family protein; KEGG: net:Neut_0854 toluene tolerance family protein.
 
 
 0.971
Slit_1741
PFAM: Mammalian cell entry related domain protein; KEGG: gur:Gura_1894 hypothetical protein.
 
 0.970
Slit_1742
Hypothetical protein; KEGG: gur:Gura_1895 ABC-type transport system involved in resistance to organic solvents ATPase component-like protein.
  
 0.955
Slit_0694
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: nmu:Nmul_A2745 anti-sigma-factor antagonist domain-containing protein.
  
 0.954
Slit_1738
PFAM: protein of unknown function DUF140; KEGG: geo:Geob_2687 protein of unknown function DUF140.
  
  
 
0.927
Slit_1589
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mei:Msip34_2713 anti-sigma-factor antagonist.
   
 
 0.766
Slit_0688
KEGG: app:CAP2UW1_0623 sporulation domain protein; PFAM: Sporulation domain protein; SMART: AAA ATPase.
       0.526
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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