STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0694PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: nmu:Nmul_A2745 anti-sigma-factor antagonist domain-containing protein. (80 aa)    
Predicted Functional Partners:
Slit_0693
PFAM: toluene tolerance family protein; KEGG: net:Neut_0854 toluene tolerance family protein.
  
 
 0.980
Slit_0690
KEGG: tbd:Tbd_1900 ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.975
Slit_0692
PFAM: Mammalian cell entry related domain protein; KEGG: nmu:Nmul_A2747 hypothetical protein.
  
 0.969
Slit_0691
PFAM: protein of unknown function DUF140; KEGG: tbd:Tbd_1899 hypothetical protein.
  
 0.954
Slit_1226
KEGG: tbd:Tbd_1190 ATP-binding ABC transporter protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.935
Slit_1742
Hypothetical protein; KEGG: gur:Gura_1895 ABC-type transport system involved in resistance to organic solvents ATPase component-like protein.
  
 0.914
Slit_1738
PFAM: protein of unknown function DUF140; KEGG: geo:Geob_2687 protein of unknown function DUF140.
  
 0.898
Slit_1741
PFAM: Mammalian cell entry related domain protein; KEGG: gur:Gura_1894 hypothetical protein.
  
 0.897
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.693
hisG
ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.
       0.497
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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