STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0701KEGG: nmu:Nmul_A0232 hypothetical protein. (115 aa)    
Predicted Functional Partners:
Slit_0703
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: nmu:Nmul_A0233 Rieske (2Fe-2S) region.
 
     0.858
Slit_0702
PFAM: protein of unknown function DUF6 transmembrane; KEGG: mei:Msip34_1565 protein of unknown function DUF6 transmembrane.
       0.811
Slit_1291
ZipA FtsZ-binding region; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.771
Slit_2611
PFAM: protein of unknown function DUF1058; KEGG: eba:ebA1059 of unknown function.
  
     0.769
Slit_0615
KEGG: neu:NE2077 hypothetical protein.
  
     0.750
Slit_0700
KEGG: cps:CPS_2443 putative lipoprotein.
       0.737
Slit_0455
PFAM: Sporulation domain protein; KEGG: har:HEAR2989 hypothetical protein.
  
     0.688
Slit_1500
PFAM: SMC domain protein; KEGG: tmz:Tmz1t_1959 SMC domain protein.
  
     0.684
Slit_0327
KEGG: net:Neut_1287 radical SAM domain-containing protein.
  
     0.675
Slit_0508
PFAM: ribonuclease II; KEGG: net:Neut_0498 ribonuclease II.
  
     0.671
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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