STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0702PFAM: protein of unknown function DUF6 transmembrane; KEGG: mei:Msip34_1565 protein of unknown function DUF6 transmembrane. (279 aa)    
Predicted Functional Partners:
Slit_0701
KEGG: nmu:Nmul_A0232 hypothetical protein.
       0.811
Slit_0703
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: nmu:Nmul_A0233 Rieske (2Fe-2S) region.
       0.766
Slit_0700
KEGG: cps:CPS_2443 putative lipoprotein.
       0.737
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
    0.567
Slit_0705
PFAM: Polyprenyl synthetase; KEGG: nmu:Nmul_A0235 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
   
   0.563
folE2
Protein of unknown function DUF198; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
    0.550
dxs
Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.547
Slit_0709
PFAM: glutamine amidotransferase class-I; KEGG: mmb:Mmol_0599 glutamine amidotransferase class-I.
 
     0.426
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.