STRINGSTRING
Slit_0703 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0703" - Rieske in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0703Rieske (2Fe-2S) iron-sulfur domain protein (368 aa)    
Predicted Functional Partners:
Slit_0702
Hypothetical protein (279 aa)
            0.909
Slit_0701
Hypothetical protein (115 aa)
 
          0.826
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides (94 aa)
 
          0.762
Slit_0700
Hypothetical protein (119 aa)
              0.743
Slit_0159
Nitrite reductase (NAD(P)H), small subunit (108 aa)
   
 
  0.741
Slit_0705
Polyprenyl synthetase (295 aa)
   
        0.733
Slit_0273
Oxidoreductase FAD/NAD(P)-binding domain protein (333 aa)
 
   
  0.701
dxs
Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) (614 aa)
   
        0.668
Slit_0508
Ribonuclease II (616 aa)
   
          0.630
Slit_2398
Hypothetical protein (140 aa)
   
          0.628
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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