STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0716PFAM: GCN5-related N-acetyltransferase; KEGG: sfu:Sfum_0600 GCN5-related N-acetyltransferase. (169 aa)    
Predicted Functional Partners:
Slit_0717
KEGG: vex:VEA_003422 hypothetical protein.
       0.686
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.470
Slit_1541
CoA-binding domain protein; KEGG: nmu:Nmul_A1676 GCN5-related N-acetyltransferase; PFAM: CoA-binding domain protein; GCN5-related N-acetyltransferase; SMART: CoA-binding domain protein.
  
 
 0.413
Slit_0718
Manually curated; PFAM: Radical SAM domain protein; KEGG: mfa:Mfla_1266 radical SAM family protein; SMART: Elongator protein 3/MiaB/NifB.
       0.400
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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