STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0722KEGG: asa:ASA_1248 ABC-type transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (294 aa)    
Predicted Functional Partners:
Slit_0721
PFAM: ABC-2 type transporter; KEGG: cps:CPS_1067 putative ABC transporter, permease protein.
 
  
 0.962
Slit_2514
PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2392 fis family transcriptional regulator.
  
 0.939
Slit_2515
PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter.
  
 0.939
Slit_2575
KEGG: mxa:MXAN_6402 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.917
Slit_0577
PFAM: ABC-2 type transporter; KEGG: cpc:Cpar_1860 ABC-2 type transporter.
 
  
 0.744
lipB
Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
       0.697
Slit_2360
KEGG: nmu:Nmul_A0584 putative ABC-2 type transport system permease protein.
 
 
 0.640
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
    
0.621
Slit_2690
PFAM: inner-membrane translocator; KEGG: app:CAP2UW1_3610 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
      0.575
Slit_0724
PFAM: protein of unknown function DUF493; KEGG: net:Neut_0759 hypothetical protein; Belongs to the UPF0250 family.
       0.507
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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