STRINGSTRING
Slit_0729 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0729" - Fis family transcriptional regulator in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0729Fis family transcriptional regulator (179 aa)    
Predicted Functional Partners:
Slit_0730
Integral membrane sensor signal transduction histidine kinase (435 aa)
 
 
  0.997
Slit_0731
TonB-dependent copper receptor (679 aa)
              0.647
Slit_0728
Signal transduction protein (287 aa)
              0.599
Slit_1813
Electron transport protein SCO1/SenC (212 aa)
 
     
  0.550
Slit_0732
Hypothetical protein (157 aa)
              0.495
Slit_2583
Electron transport protein SCO1/SenC (195 aa)
         
  0.484
Slit_0046
Aminoglycoside phosphotransferase (352 aa)
 
          0.415
Slit_2492
Transcriptional regulator (224 aa)
   
          0.411
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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