STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0797KEGG: tye:THEYE_A0566 SCP-like extracellular protein; PFAM: SCP-like extracellular; SMART: Allergen V5/Tpx-1 family protein. (172 aa)    
Predicted Functional Partners:
uvrA
Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.777
Slit_1451
KEGG: geo:Geob_1618 NHL repeat containing protein; PFAM: Ig domain protein group 2 domain protein; Kelch repeat-containing protein; SMART: Ig domain protein group 2 domain protein; Kelch repeat-containing protein.
 
    0.754
Slit_1579
KEGG: ade:Adeh_2181 ABC branched-chain amino acid transporter, fused ATPase and inner-membrane subunits; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
   
   0.691
Slit_2690
PFAM: inner-membrane translocator; KEGG: app:CAP2UW1_3610 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
    
   0.671
Slit_0795
KEGG: eba:ebD76 hypothetical protein.
       0.476
Slit_0796
KEGG: eba:ebD75 hypothetical protein.
       0.476
Slit_0743
PFAM: conserved hypothetical protein; KEGG: mei:Msip34_2317 hypothetical protein.
  
     0.407
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.