STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0809KEGG: avn:Avin_01660 hypothetical protein. (173 aa)    
Predicted Functional Partners:
Slit_0811
PFAM: NifZ family protein; KEGG: azo:azo0547 nitrogen fixation protein.
 
 
   0.956
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
     0.954
Slit_0812
KEGG: app:CAP2UW1_4379 nitrogen fixation protein NifM; TIGRFAM: nitrogen fixation protein NifM; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase.
 
 
   0.898
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.808
Slit_0901
PFAM: LRV FeS4 cluster domain protein; leucine rich repeat variant; KEGG: azo:azo0564 hypothetical protein.
 
     0.807
Slit_0877
KEGG: azo:azo0536 hypothetical protein.
 
     0.805
Slit_0887
KEGG: azo:azo0544 hypothetical protein.
 
     0.801
htpG
ATP-binding region ATPase domain protein; Molecular chaperone. Has ATPase activity.
   
 0.792
Slit_0808
Manually curated; TIGRFAM: serine O-acetyltransferase; KEGG: mca:MCA1830 serine acetyltransferase.
       0.782
Slit_0884
KEGG: app:CAP2UW1_4450 nitrogen fixation protein FixT; TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein.
 
     0.778
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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