STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0834PFAM: ferredoxin; KEGG: azo:azo0527 ferredoxin IV. (94 aa)    
Predicted Functional Partners:
Slit_1608
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; NADH dehydrogenase (ubiquinone) 24 kDa subunit; Soluble ligand binding domain; KEGG: dar:Daro_0979 NADH dehydrogenase.
  
 
 0.907
Slit_0805
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
 0.892
Slit_0833
PFAM: NifQ family protein; KEGG: hha:Hhal_0280 NifQ family protein.
 
 0.873
Slit_0836
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: app:CAP2UW1_4423 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
   0.855
Slit_0877
KEGG: azo:azo0536 hypothetical protein.
  
    0.816
Slit_0835
KEGG: cyt:cce_0545 putative nitrogenase-associated protein; TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; Belongs to the ArsC family.
   
   0.805
Slit_0838
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: azo:azo1248 NifY protein.
 
     0.752
Slit_0809
KEGG: avn:Avin_01660 hypothetical protein.
  
     0.743
Slit_0887
KEGG: azo:azo0544 hypothetical protein.
  
     0.719
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
  
  
 0.675
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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