STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0835KEGG: cyt:cce_0545 putative nitrogenase-associated protein; TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; Belongs to the ArsC family. (171 aa)    
Predicted Functional Partners:
Slit_0837
KEGG: azo:azo0523 nitrogen fixation protein; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein.
 
   
 0.902
Slit_0913
KEGG: bbt:BBta_2171 hypothetical protein.
     0.886
Slit_0832
ADP-ribosyl-(dinitrogen reductase) hydrolase; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; KEGG: dar:Daro_1447 ADP-ribosylation/crystallin J1; PFAM: ADP-ribosylation/Crystallin J1.
     0.849
Slit_0833
PFAM: NifQ family protein; KEGG: hha:Hhal_0280 NifQ family protein.
 
  
 0.837
Slit_0834
PFAM: ferredoxin; KEGG: azo:azo0527 ferredoxin IV.
   
   0.820
Slit_0836
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: app:CAP2UW1_4423 4Fe-4S ferredoxin iron-sulfur binding domain protein.
       0.767
Slit_0907
Nitrogen fixation protein; KEGG: azo:azo0558 hypothetical protein; TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269.
 
     0.758
Slit_0809
KEGG: avn:Avin_01660 hypothetical protein.
  
     0.753
Slit_1985
PFAM: DSBA oxidoreductase; KEGG: gym:GYMC10_4000 DsbA oxidoreductase.
   
 
 0.737
Slit_0901
PFAM: LRV FeS4 cluster domain protein; leucine rich repeat variant; KEGG: azo:azo0564 hypothetical protein.
  
     0.735
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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