STRINGSTRING
Slit_0846 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0846" - Hypothetical protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0846Hypothetical protein (299 aa)    
Predicted Functional Partners:
Slit_0847
ATPase AAA (330 aa)
 
   
  0.980
Slit_0844
Von Willebrand factor type A (321 aa)
 
        0.923
Slit_0845
Hypothetical protein (150 aa)
 
          0.885
Slit_0842
Hypothetical protein (590 aa)
 
        0.866
Slit_2221
ATPase AAA (305 aa)
 
   
  0.717
Slit_2345
ATPase AAA (268 aa)
         
  0.429
Slit_1125
ATPase AAA (260 aa)
         
  0.429
Slit_0987
ATPase AAA (267 aa)
         
  0.429
Slit_0023
ATPase AAA (267 aa)
         
  0.429
pcnB
poly(A) polymerase; Adds poly(A) tail to the 3’ end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control (447 aa)
              0.414
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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