STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0850PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: abc:ACICU_00863 site-specific DNA methylase. (289 aa)    
Predicted Functional Partners:
Slit_0250
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: cvi:CV_2111 methyltransferase.
  
  
  0.919
Slit_0851
SMART: AAA ATPase; KEGG: abc:ACICU_00862 putative ABC oligo/dipeptide transport, ATP-binding protein.
 
     0.905
Slit_0241
PFAM: Mu P family protein; KEGG: bvi:Bcep1808_1291 bacteriophage Mu P family protein.
 
    0.485
Slit_0226
TIGRFAM: phage virion morphogenesis protein; KEGG: mca:MCA2926 prophage MuMc02, virion morphogenesis protein.
 
    0.413
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.