STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0853KEGG: ote:Oter_2888 amidohydrolase 2. (76 aa)    
Predicted Functional Partners:
Slit_0854
KEGG: azo:azo2117 hypothetical protein.
       0.773
Slit_0855
PFAM: protein of unknown function nitrogen fixation; KEGG: avn:Avin_01570 hypothetical protein.
       0.773
Slit_0856
Transcriptional regulator, NifA, Fis Family; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; KEGG: azo:azo0519 nif-specific regulatory protein; SMART: GAF domain protein; AAA ATPase.
       0.472
Slit_0857
PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: nitrogen fixation negative regulator NifL; PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; KEGG: azo:azo0518 nitrogen fixation regulatory protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein.
       0.472
Slit_0852
KEGG: mpt:Mpe_B0625 hypothetical protein.
       0.424
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.