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Slit_0856 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0856" - NifA family transcriptional regulator in Sideroxydans lithotrophicus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0856NifA family transcriptional regulator (517 aa)    
Predicted Functional Partners:
Slit_0857
PAS/PAC sensor signal transduction histidine kinase (521 aa)
     
  0.972
Slit_0436
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (476 aa)
   
     
  0.877
Slit_0837
Nitrogenase cofactor biosynthesis protein NifB (501 aa)
 
     
  0.723
Slit_0877
Hypothetical protein (286 aa)
 
          0.625
Slit_0811
NifZ family protein (158 aa)
 
     
  0.614
Slit_0833
NifQ family protein (185 aa)
 
     
  0.549
Slit_0855
Hypothetical protein (72 aa)
              0.527
Slit_0854
Hypothetical protein (144 aa)
              0.527
Slit_0853
Amidohydrolase 2 (76 aa)
              0.527
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components- the iron protein and the molybdenum-iron protein (292 aa)
         
  0.481
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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