STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0867KEGG: lch:Lcho_1543 sporulation domain-containing protein. (744 aa)    
Predicted Functional Partners:
Slit_0868
KEGG: lch:Lcho_1542 cytochrome c family protein; TIGRFAM: cytochrome C family protein; PFAM: doubled CXXCH domain protein.
   
 
 0.784
Slit_0869
KEGG: mca:MCA2189 cytochrome c family protein.
   
 
 0.750
Slit_0870
KEGG: lch:Lcho_1540 hypothetical protein.
     
 0.738
Slit_1448
Hypothetical protein; KEGG: lch:Lcho_1542 cytochrome c family protein.
   
 
 0.588
Slit_1447
KEGG: lch:Lcho_1541 cytochrome c family protein.
   
 
 0.587
Slit_1446
KEGG: lch:Lcho_1540 hypothetical protein.
      
 0.567
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.