STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0877KEGG: azo:azo0536 hypothetical protein. (286 aa)    
Predicted Functional Partners:
Slit_0876
TIGRFAM: hemerythrin-like metal-binding protein; KEGG: azo:azo0535 putative hemerythrin-like protein.
 
     0.945
Slit_0884
KEGG: app:CAP2UW1_4450 nitrogen fixation protein FixT; TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein.
 
    0.883
Slit_0834
PFAM: ferredoxin; KEGG: azo:azo0527 ferredoxin IV.
  
    0.816
Slit_0907
Nitrogen fixation protein; KEGG: azo:azo0558 hypothetical protein; TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269.
 
    0.815
Slit_0901
PFAM: LRV FeS4 cluster domain protein; leucine rich repeat variant; KEGG: azo:azo0564 hypothetical protein.
 
    0.808
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
    0.807
Slit_0811
PFAM: NifZ family protein; KEGG: azo:azo0547 nitrogen fixation protein.
 
    0.803
Slit_0887
KEGG: azo:azo0544 hypothetical protein.
 
     0.798
Slit_0926
KEGG: azo:azo1131 hypothetical protein.
 
     0.797
Slit_0809
KEGG: avn:Avin_01660 hypothetical protein.
 
     0.796
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.