STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0878SMART: beta-lactamase domain protein; KEGG: net:Neut_2129 cyclic-AMP phosphodiesterase. (254 aa)    
Predicted Functional Partners:
Slit_0537
Metal dependent phosphohydrolase; KEGG: dar:Daro_3357 hypothetical protein; PFAM: GAF domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: GAF domain protein; metal-dependent phosphohydrolase HD region.
     0.927
Slit_2074
PFAM: Aldose 1-epimerase; KEGG: tbd:Tbd_2730 dihydroxyacid dehydratase; Belongs to the glucose-6-phosphate 1-epimerase family.
    
   0.712
Slit_0533
KEGG: mfa:Mfla_2129 adenylate/guanylate cyclase; PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase.
 
   
 0.680
Slit_0671
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dar:Daro_0917 ErfK/YbiS/YcfS/YnhG.
  
     0.653
Slit_2211
KEGG: mfa:Mfla_1127 hypothetical protein.
 
     0.595
Slit_0252
Adenylate/guanylate cyclase with Chase sensor; KEGG: sat:SYN_01481 adenylate cyclase; PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase.
 
   
 0.570
Slit_2048
KEGG: sse:Ssed_3621 putative adenylate/guanylate cyclase; PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase.
 
   
 0.565
Slit_2043
KEGG: mfa:Mfla_1127 hypothetical protein.
 
     0.564
Slit_2133
KEGG: lch:Lcho_2636 hypothetical protein.
  
     0.553
Slit_0532
FHA domain containing protein; KEGG: dar:Daro_3359 forkhead-associated; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein.
 
     0.528
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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