STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0884KEGG: app:CAP2UW1_4450 nitrogen fixation protein FixT; TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein. (73 aa)    
Predicted Functional Partners:
Slit_0886
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: azo:azo0543 NifY protein.
 
  
 0.897
Slit_0887
KEGG: azo:azo0544 hypothetical protein.
 
     0.888
Slit_0877
KEGG: azo:azo0536 hypothetical protein.
 
    0.883
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
  
 0.860
Slit_0907
Nitrogen fixation protein; KEGG: azo:azo0558 hypothetical protein; TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269.
 
    0.832
Slit_0811
PFAM: NifZ family protein; KEGG: azo:azo0547 nitrogen fixation protein.
 
  
 0.830
Slit_0838
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: azo:azo1248 NifY protein.
 
  
 0.802
Slit_0833
PFAM: NifQ family protein; KEGG: hha:Hhal_0280 NifQ family protein.
  
  
 0.800
Slit_0883
Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.800
Slit_0901
PFAM: LRV FeS4 cluster domain protein; leucine rich repeat variant; KEGG: azo:azo0564 hypothetical protein.
 
    0.777
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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