STRINGSTRING
Slit_0889 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0889" - Metal dependent phosphohydrolase in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0889Metal dependent phosphohydrolase (202 aa)    
Predicted Functional Partners:
Slit_1232
Metal dependent phosphohydrolase (375 aa)
 
   
  0.792
Slit_0891
Hypothetical protein (191 aa)
              0.692
Slit_0890
O-methyltransferase family 3 (228 aa)
              0.692
Slit_0892
Hypothetical protein (153 aa)
              0.685
Slit_1545
Diguanylate cyclase with GAF sensor (379 aa)
 
  0.649
Slit_1163
Response regulator receiver protein (175 aa)
 
            0.645
Slit_2225
Response regulator receiver modulated diguanylate cyclase (322 aa)
 
  0.630
Slit_1774
Diguanylate cyclase (304 aa)
 
  0.623
Slit_1239
Diguanylate cyclase (387 aa)
 
  0.591
Slit_1559
Diguanylate cyclase (294 aa)
 
  0.584
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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