STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0906PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: hna:Hneap_0704 positive regulator of sigma E, RseC/MucC. (145 aa)    
Predicted Functional Partners:
Slit_1276
PFAM: MucB/RseB family protein; KEGG: nmu:Nmul_A1748 sigma E regulatory protein, MucB/RseB.
  
  
 0.828
Slit_0907
Nitrogen fixation protein; KEGG: azo:azo0558 hypothetical protein; TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269.
       0.787
Slit_0905
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: azo:azo0560 NifX protein.
       0.782
Slit_0904
TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; KEGG: dar:Daro_1505 nitrogenase molybdenum-iron cofactor biosynthesis protein; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.
       0.757
rnfG
Electron transport complex, RnfABCDGE type, G subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.
 
     0.603
rnfG-2
Electron transport complex, RnfABCDGE type, G subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.
 
     0.586
Slit_0908
PFAM: protein of unknown function DUF683; KEGG: dar:Daro_1509 hypothetical protein.
       0.554
Slit_0864
PFAM: protein of unknown function UPF0125; KEGG: app:CAP2UW1_4387 protein of unknown function UPF0125; Belongs to the UPF0125 (RnfH) family.
 
     0.532
Slit_0909
KEGG: azo:azo0556 ferredoxin; TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein.
       0.521
Slit_0910
KEGG: mca:MCA0256 ferredoxin, 2Fe-2S.
       0.513
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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